Phaeobacter piscinae str. P13

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Phaeobacter

Description

Phaeobacter piscinae strain P13 is a Gram-negative, rod-shaped bacterium isolated from a turbot rearing facility. This organism is characterized by having four replicons, which may suggest a complex genomic architecture that could play a role in its adaptability or metabolic capabilities within aquaculture environments. The specific habitat of Phaeobacter piscinae str. P13 highlights its potential significance in aquaculture, particularly in the context of fish rearing. The turbot rearing facility provides a unique ecological niche where this bacterium could interact with other microbial communities, possibly influencing the health and growth of turbot fish. The organism's accession numbers, NZ_CP010768.1, NZ_CP010771.1, NZ_CP010773.1, and NZ_CP010774.1, indicate its genomic information is accessible for further study, which could aid in understanding its role in the rearing environment and its interactions with both aquatic organisms and the surrounding microbiota. In summary, Phaeobacter piscinae str. P13 exemplifies a specialized bacterium that may contribute to the microbial dynamics in aquaculture settings, potentially affecting the health and sustainability of fish farming practices. The investigation of this strain could provide insights into its ecological interactions and its potential applications in aquaculture management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPhaeobacter
SpeciesPhaeobacter piscinae
StrainP13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatturbot rearing facility
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phaeobacter piscinae strain P13 plasmid pP13_f, complete sequence.

Gene Summary

Adenine Count

12618 bp

Thymine Count

12719 bp

Guanine Count

22451 bp

Cytosine Count

21417 bp

Genome Length

69205 bp

Protein-coding Genes

49 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPhaeoP13_RS20225Not AvailablePositive12600 - 1391048886.7
glycosyltransferase family 2 proteinPhaeoP13_RS20230Not AvailablePositive13907 - 1482435076.3
glycosyltransferase family 4 proteinPhaeoP13_RS20235Not AvailablePositive14934 - 1661062540.6
hypothetical proteinPhaeoP13_RS20240Not AvailablePositive16607 - 1762638561.1
calcium-binding proteinPhaeoP13_RS20245Not AvailableNegative17771 - 1934552561.2
sulfotransferase family 2 domain-containing proteinPhaeoP13_RS20250Not AvailableNegative20238 - 2101429443.6
type i secretion system permease/atpasePhaeoP13_RS20260Not AvailablePositive21514 - 2339766609.4
hlyd family type i secretion periplasmic adaptor subunitPhaeoP13_RS20265Not AvailablePositive23394 - 2470148209.7
gdp-mannose 4,6-dehydratasePhaeoP13_RS20270Not AvailablePositive24872 - 2599041981.8
gdp-l-fucose synthasePhaeoP13_RS20275Not AvailablePositive25995 - 2698436056.0

Displaying genes 11 – 20 of 368 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.