Phaeobacter piscinae str. P13

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Phaeobacter

Description

Phaeobacter piscinae strain P13 is a Gram-negative, rod-shaped bacterium isolated from a turbot rearing facility. This organism is characterized by having four replicons, which may suggest a complex genomic architecture that could play a role in its adaptability or metabolic capabilities within aquaculture environments. The specific habitat of Phaeobacter piscinae str. P13 highlights its potential significance in aquaculture, particularly in the context of fish rearing. The turbot rearing facility provides a unique ecological niche where this bacterium could interact with other microbial communities, possibly influencing the health and growth of turbot fish. The organism's accession numbers, NZ_CP010768.1, NZ_CP010771.1, NZ_CP010773.1, and NZ_CP010774.1, indicate its genomic information is accessible for further study, which could aid in understanding its role in the rearing environment and its interactions with both aquatic organisms and the surrounding microbiota. In summary, Phaeobacter piscinae str. P13 exemplifies a specialized bacterium that may contribute to the microbial dynamics in aquaculture settings, potentially affecting the health and sustainability of fish farming practices. The investigation of this strain could provide insights into its ecological interactions and its potential applications in aquaculture management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusPhaeobacter
SpeciesPhaeobacter piscinae
StrainP13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatturbot rearing facility
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phaeobacter piscinae strain P13 plasmid pP13_d, complete sequence.

Gene Summary

Adenine Count

18796 bp

Thymine Count

18095 bp

Guanine Count

23173 bp

Cytosine Count

22066 bp

Genome Length

82130 bp

Protein-coding Genes

81 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication initiator protein aPhaeoP13_RS20175Not AvailableNegative1 - 101437783.8
aaa family atpasePhaeoP13_RS20180Not AvailablePositive1511 - 292652409.9
parb/repb/spo0j family partition proteinPhaeoP13_RS20185Not AvailablePositive3029 - 415640192.9
udp-glucose dehydrogenase family proteinPhaeoP13_RS20190Not AvailableNegative4243 - 554746839.4
nad-dependent epimerase/dehydratase family proteinPhaeoP13_RS20195Not AvailableNegative5832 - 684236766.9
glycosyltransferasePhaeoP13_RS20200Not AvailablePositive6996 - 804238348.9
abc transporter permeasePhaeoP13_RS20205Not AvailableNegative8051 - 895933018.0
sugar transporterPhaeoP13_RS20210Not AvailablePositive9076 - 1050652087.2
abc transporter atp-binding proteinPhaeoP13_RS20215Not AvailablePositive10524 - 1118024335.3
udp-galactopyranose mutasePhaeoP13_RS20220Not AvailablePositive11341 - 1249243307.7

Displaying genes 1 – 10 of 368 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.