Pseudomonas sp. NFIX46

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFIX46 is a bacterial strain characterized by having a single replicon, which may influence its genetic stability and adaptability. The strain is cataloged under the accession number FMVX00000000.1, providing a reference for its genomic information in biological databases. Pseudomonas species are known for their metabolic diversity and ability to thrive in various environments, including soil, water, and even as opportunistic pathogens in humans and animals. The ecological role of Pseudomonas sp. NFIX46 may be significant, as members of this genus are often involved in biogeochemical cycles, including the degradation of organic pollutants and the cycling of nutrients. The presence of a single replicon in Pseudomonas sp. NFIX46 could suggest a streamlined genomic organization, which might be advantageous for rapid growth and adaptation to changing environmental conditions. This trait can be particularly relevant in competitive ecosystems, where efficient resource utilization is critical for survival. In summary, Pseudomonas sp. NFIX46, with its single replicon and documented genomic information, exemplifies the ecological versatility of the Pseudomonas genus. Understanding its genetic structure can provide insights into its functional capabilities and ecological interactions in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFIX46
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFIX46
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFIX46


Gene Summary

Adenine Count

1262726 bp

Thymine Count

1250715 bp

Guanine Count

1920696 bp

Cytosine Count

1942178 bp

Genome Length

6379190 bp

Protein-coding Genes

5580 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative quorum-sensing-regulated virulence factorSAMN03159313_1481Not AvailablePositive1242316 - 124274115262.3
hypothetical proteinSAMN03159313_1482Not AvailableNegative1242742 - 12429367416.88
Hypothetical proteinSAMN03159313_1483Not AvailablePositive1243289 - 124440742351.6
regulatory proteinSAMN03159313_1484Not AvailableNegative1244488 - 124495818020.6
Dna strand exchange and recombination protein with protease and nuclease activitySAMN03159313_1485Not AvailableNegative1244967 - 124602537450.2
nicotinamide-nucleotide amidaseSAMN03159313_1486Not AvailableNegative1246109 - 124660917662.9
RzSAMN03159313_1487Not AvailableNegative1246678 - 124720819025.6
LysozymeSAMN03159313_1488Not AvailableNegative1247190 - 124775320923.8
hypothetical proteinSAMN03159313_1489Not AvailableNegative1247810 - 12480528811.43
Putative tail fiber proteinSAMN03159313_1490Not AvailableNegative1248064 - 124926643285.3

Displaying genes 1 – 10 of 5716 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

58 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001767oxalateC2O4Chemical structure of oxalateNot available
Average88.019Da
Monoisotopic87.979658488Da
BASm0001772maleateC4H2O4Chemical structure of maleateNot available
Average114.057Da
Monoisotopic113.996405704Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 58 metabolites

Health Effects

No health effects information available for this bacterium.