Sphingomonas panacis str. DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis str. DCY99 is a rod-shaped bacterium distinguished by the presence of flagella, which facilitates motility. This species has a unique genomic organization characterized by two replicons, suggesting a complex genetic architecture that may contribute to its adaptability and survival in varied environments. The strain is cataloged under two accessions: NZ_CP014169.1 and NZ_CP014168.1, which provide access to its genomic information in public databases. Sphingomonas species are typically known for their versatility in degrading various organic compounds, including those found in environmental pollutants. This capability highlights their potential role in bioremediation processes, where such bacteria can be employed to clean up contaminated environments. The presence of flagella may enhance their ability to navigate toward nutrient sources or away from harmful substances, illustrating their ecological adaptability. In summary, Sphingomonas panacis str. DCY99's rod shape, motility through flagella, dual replicon structure, and genetic accessibility position it as a significant organism for study in microbial ecology and bioremediation applications. Its traits suggest it could play an important role in nutrient cycling and environmental detoxification, reflecting the broader ecological significance of Sphingomonas species in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
StrainDCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis str. DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome maturation factor rimmJ0A91_RS17720Not AvailableNegative3897759 - 389824717188.5
30s ribosomal protein s16J0A91_RS17725Not AvailableNegative3898247 - 389866615050.7
signal recognition particle proteinJ0A91_RS17730Not AvailableNegative3898785 - 390029952566.7
bifunctional diguanylate cyclase/phosphodiesteraseJ0A91_RS17735Not AvailablePositive3900537 - 390213856700.8
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabJ0A91_RS17740Not AvailablePositive3902252 - 390370351387.8
signal recognition particle-docking protein ftsyJ0A91_RS17745Not AvailablePositive3903700 - 390463833216.3
inner membrane-spanning protein ycibJ0A91_RS17750Not AvailablePositive3904631 - 390527823632.7
hypothetical proteinJ0A91_RS17755Not AvailableNegative3905305 - 39054846843.12
superoxide dismutaseJ0A91_RS17760Not AvailableNegative3905639 - 390625923002.9
phage shock protein operon transcriptional activatorJ0A91_RS17765Not AvailableNegative3906412 - 390743737834.2

Displaying genes 3891 – 3900 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.