Sphingomonas panacis str. DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis str. DCY99 is a rod-shaped bacterium distinguished by the presence of flagella, which facilitates motility. This species has a unique genomic organization characterized by two replicons, suggesting a complex genetic architecture that may contribute to its adaptability and survival in varied environments. The strain is cataloged under two accessions: NZ_CP014169.1 and NZ_CP014168.1, which provide access to its genomic information in public databases. Sphingomonas species are typically known for their versatility in degrading various organic compounds, including those found in environmental pollutants. This capability highlights their potential role in bioremediation processes, where such bacteria can be employed to clean up contaminated environments. The presence of flagella may enhance their ability to navigate toward nutrient sources or away from harmful substances, illustrating their ecological adaptability. In summary, Sphingomonas panacis str. DCY99's rod shape, motility through flagella, dual replicon structure, and genetic accessibility position it as a significant organism for study in microbial ecology and bioremediation applications. Its traits suggest it could play an important role in nutrient cycling and environmental detoxification, reflecting the broader ecological significance of Sphingomonas species in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
StrainDCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis str. DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis str. DCY99


Gene Summary

Adenine Count

859289 bp

Thymine Count

858823 bp

Guanine Count

1638255 bp

Cytosine Count

1647441 bp

Genome Length

5003808 bp

Protein-coding Genes

4531 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
f0f1 atp synthase subunit gammaJ0A91_RS23240Not AvailablePositive1142 - 199930011.1
histidine kinase dimerization/phosphoacceptor domain -containing proteinJ0A91_RS23245Not AvailableNegative2321 - 446577659.1
nad(p)h-dependent oxidoreductaseJ0A91_RS23250Not AvailablePositive4868 - 552723964.5
phosphoketolaseJ0A91_RS23255Not AvailablePositive5590 - 796288418.8
ompw family proteinJ0A91_RS23260Not AvailablePositive8051 - 871023690.7
hypothetical proteinJ0A91_RS23265Not AvailablePositive8755 - 923417703.4
voc family proteinJ0A91_RS23270Not AvailablePositive9389 - 986817705.3
crp/fnr family transcriptional regulatorJ0A91_RS23275Not AvailableNegative9984 - 1073327109.6
cytochrome bd-i oxidase subunit cydxJ0A91_RS23280Not AvailableNegative10788 - 109194741.75
cytochrome d ubiquinol oxidase subunit iiJ0A91_RS23285Not AvailableNegative10936 - 1207541097.6

Displaying genes 1 – 10 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.