Sphingomonas panacis str. DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis str. DCY99 is a rod-shaped bacterium distinguished by the presence of flagella, which facilitates motility. This species has a unique genomic organization characterized by two replicons, suggesting a complex genetic architecture that may contribute to its adaptability and survival in varied environments. The strain is cataloged under two accessions: NZ_CP014169.1 and NZ_CP014168.1, which provide access to its genomic information in public databases. Sphingomonas species are typically known for their versatility in degrading various organic compounds, including those found in environmental pollutants. This capability highlights their potential role in bioremediation processes, where such bacteria can be employed to clean up contaminated environments. The presence of flagella may enhance their ability to navigate toward nutrient sources or away from harmful substances, illustrating their ecological adaptability. In summary, Sphingomonas panacis str. DCY99's rod shape, motility through flagella, dual replicon structure, and genetic accessibility position it as a significant organism for study in microbial ecology and bioremediation applications. Its traits suggest it could play an important role in nutrient cycling and environmental detoxification, reflecting the broader ecological significance of Sphingomonas species in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
StrainDCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis str. DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
femab family xrta/pep-cterm system-associated proteinJ0A91_RS17175Not AvailableNegative3782585 - 378365837863.7
xrta system polysaccharide deacetylaseJ0A91_RS17180Not AvailableNegative3783655 - 378449431292.3
xrta/pep-cterm system-associated atpaseJ0A91_RS24895Not AvailableNegative3784503 - 378619761129.6
hypothetical proteinJ0A91_RS17190Not AvailableNegative3786208 - 378780956346.8
aaa family atpaseJ0A91_RS17195Not AvailableNegative3787806 - 378873532743.5
xrta system polysaccharide chain length determinantJ0A91_RS17200Not AvailableNegative3788732 - 379025553826.3
xrta/pep-cterm system exopolysaccharide export proteinJ0A91_RS17205Not AvailableNegative3790269 - 379091022601.4
pyridoxal-dependent decarboxylase, exosortase a system-associatedJ0A91_RS17210Not AvailableNegative3790979 - 379223843405.3
acyl-coa ligase (amp-forming), exosortase a system-associatedJ0A91_RS17215Not AvailableNegative3792235 - 379374653497.2
acyl carrier proteinJ0A91_RS17220Not AvailablePositive3793860 - 37941329690.62

Displaying genes 3781 – 3790 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.