Sphingomonas panacis str. DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis str. DCY99 is a rod-shaped bacterium distinguished by the presence of flagella, which facilitates motility. This species has a unique genomic organization characterized by two replicons, suggesting a complex genetic architecture that may contribute to its adaptability and survival in varied environments. The strain is cataloged under two accessions: NZ_CP014169.1 and NZ_CP014168.1, which provide access to its genomic information in public databases. Sphingomonas species are typically known for their versatility in degrading various organic compounds, including those found in environmental pollutants. This capability highlights their potential role in bioremediation processes, where such bacteria can be employed to clean up contaminated environments. The presence of flagella may enhance their ability to navigate toward nutrient sources or away from harmful substances, illustrating their ecological adaptability. In summary, Sphingomonas panacis str. DCY99's rod shape, motility through flagella, dual replicon structure, and genetic accessibility position it as a significant organism for study in microbial ecology and bioremediation applications. Its traits suggest it could play an important role in nutrient cycling and environmental detoxification, reflecting the broader ecological significance of Sphingomonas species in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
StrainDCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis str. DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system major pseudopilin gspgJ0A91_RS16875Not AvailableNegative3721677 - 372212015791.9
type ii secretion system inner membrane protein gspfJ0A91_RS16880Not AvailableNegative3722137 - 372336344611.4
gspe/pule family proteinJ0A91_RS16885Not AvailableNegative3723501 - 372505755248.0
type ii secretion system secretin gspdJ0A91_RS16890Not AvailableNegative3725060 - 372727076677.3
type ii secretion system protein nJ0A91_RS16895Not AvailableNegative3727267 - 372809727954.9
Trna-valNot AvailableNot AvailablePositive3728405 - 3728479Not Available
hu family dna-binding proteinJ0A91_RS16905Not AvailableNegative3728617 - 37288899416.22
endopeptidase laJ0A91_RS16910Not AvailableNegative3729039 - 373146588413.9
m1 family metallopeptidaseJ0A91_RS16915Not AvailablePositive3731560 - 373327262902.7
hypothetical proteinJ0A91_RS16920Not AvailablePositive3733301 - 373390321937.0

Displaying genes 3721 – 3730 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.