Sphingomonas panacis str. DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis str. DCY99 is a rod-shaped bacterium distinguished by the presence of flagella, which facilitates motility. This species has a unique genomic organization characterized by two replicons, suggesting a complex genetic architecture that may contribute to its adaptability and survival in varied environments. The strain is cataloged under two accessions: NZ_CP014169.1 and NZ_CP014168.1, which provide access to its genomic information in public databases. Sphingomonas species are typically known for their versatility in degrading various organic compounds, including those found in environmental pollutants. This capability highlights their potential role in bioremediation processes, where such bacteria can be employed to clean up contaminated environments. The presence of flagella may enhance their ability to navigate toward nutrient sources or away from harmful substances, illustrating their ecological adaptability. In summary, Sphingomonas panacis str. DCY99's rod shape, motility through flagella, dual replicon structure, and genetic accessibility position it as a significant organism for study in microbial ecology and bioremediation applications. Its traits suggest it could play an important role in nutrient cycling and environmental detoxification, reflecting the broader ecological significance of Sphingomonas species in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
StrainDCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis str. DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ecoai/ftnuii family type i restriction enzme subunit rJ0A91_RS16425Not AvailablePositive3608459 - 361081088140.0
class i sam-dependent dna methyltransferaseJ0A91_RS16430Not AvailablePositive3610821 - 361229055305.8
restriction endonuclease subunit sJ0A91_RS16435Not AvailablePositive3612287 - 361395159461.4
sir2 family proteinJ0A91_RS16440Not AvailablePositive3613956 - 361508641510.8
hypothetical proteinJ0A91_RS16445Not AvailableNegative3615135 - 361648648726.9
ribbon-helix-helix domain-containing proteinJ0A91_RS16450Not AvailablePositive3617015 - 361743715993.1
recombinase family proteinJ0A91_RS16455Not AvailablePositive3617646 - 361933461522.7
Trna-metNot AvailableNot AvailablePositive3619291 - 3619367Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive3619451 - 3619565Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive3619746 - 3622537Not Available

Displaying genes 3631 – 3640 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.