Sphingomonas panacis str. DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis str. DCY99 is a rod-shaped bacterium distinguished by the presence of flagella, which facilitates motility. This species has a unique genomic organization characterized by two replicons, suggesting a complex genetic architecture that may contribute to its adaptability and survival in varied environments. The strain is cataloged under two accessions: NZ_CP014169.1 and NZ_CP014168.1, which provide access to its genomic information in public databases. Sphingomonas species are typically known for their versatility in degrading various organic compounds, including those found in environmental pollutants. This capability highlights their potential role in bioremediation processes, where such bacteria can be employed to clean up contaminated environments. The presence of flagella may enhance their ability to navigate toward nutrient sources or away from harmful substances, illustrating their ecological adaptability. In summary, Sphingomonas panacis str. DCY99's rod shape, motility through flagella, dual replicon structure, and genetic accessibility position it as a significant organism for study in microbial ecology and bioremediation applications. Its traits suggest it could play an important role in nutrient cycling and environmental detoxification, reflecting the broader ecological significance of Sphingomonas species in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
StrainDCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis str. DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dmt family transporterJ0A91_RS07400Not AvailablePositive1632810 - 163370030555.2
gnat family n-acetyltransferaseJ0A91_RS07405Not AvailablePositive1633697 - 163417617337.6
tfox/sxy family proteinJ0A91_RS07410Not AvailablePositive1634176 - 163452612662.0
inorganic diphosphataseJ0A91_RS07415Not AvailableNegative1634661 - 163521220518.7
m61 family metallopeptidaseJ0A91_RS07420Not AvailableNegative1635252 - 163715669465.1
duf1345 domain-containing proteinJ0A91_RS07425Not AvailableNegative1637219 - 163786023201.3
histidine--trna ligaseJ0A91_RS07430Not AvailablePositive1637955 - 163918744684.1
peptide chain release factor 1J0A91_RS07435Not AvailablePositive1639404 - 164047739484.7
peptide chain release factor n(5)-glutamine methyltransferaseJ0A91_RS07440Not AvailablePositive1640625 - 164144928670.4
duf4167 domain-containing proteinJ0A91_RS07445Not AvailablePositive1641713 - 164273837583.4

Displaying genes 1821 – 1830 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.