Dehalococcoides sp. UCH007

Cocci

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalococcoides

Description

Dehalococcoides sp. UCH007 is a cocci-shaped bacterium known for its unique metabolic capabilities, particularly in the bioremediation of halogenated compounds. This species is characterized by the presence of flagella, which may contribute to its motility and ability to navigate its environment effectively. Genomically, Dehalococcoides sp. UCH007 has a single replicon, indicating a streamlined genomic organization. The accession number for this strain is NZ_AP014722.1, which serves as a reference point for researchers interested in its genetic makeup and potential applications. Dehalococcoides species, including UCH007, are recognized for their role in the reductive dehalogenation process, where they convert toxic halogenated compounds into less harmful substances. This trait is particularly valuable in environmental microbiology, as it offers a natural solution to the detoxification of contaminated sites. In summary, Dehalococcoides sp. UCH007 exhibits a cocci shape, possesses flagella, and has a singular replicon, making it an interesting subject for studies on microbial ecology and bioremediation. Its capabilities highlight the importance of specific microbial traits in addressing environmental pollution and underscore the potential of utilizing such microorganisms in ecological restoration efforts.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalococcoides
SpeciesDehalococcoides sp. UCH007
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dehalococcoides sp. UCH007 chromosome, complete genome.

Gene Summary

Adenine Count

390600 bp

Thymine Count

391659 bp

Guanine Count

345116 bp

Cytosine Count

346173 bp

Genome Length

1473548 bp

Protein-coding Genes

1508 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc ribbon domain-containing proteinUCH007_RS01490Not AvailablePositive284093 - 28478826142.2
ribonuclease hi family proteinUCH007_RS01495Q9HSF6Positive284822 - 28521113918.6
duf4328 domain-containing proteinUCH007_RS01505Not AvailableNegative285728 - 28630621621.7
hypothetical proteinUCH007_RS01510Not AvailablePositive286674 - 2869169229.06
s41 family peptidaseUCH007_RS01515Q44879Positive287014 - 28814740162.7
phenylalanine--trna ligase subunit alphaUCH007_RS01520Q3Z9I8Positive288264 - 28930439167.1
phenylalanine--trna ligase subunit betaUCH007_RS01525Q3Z9I7Positive289306 - 29173590296.2
inorganic diphosphataseUCH007_RS01530Q8TMI3Positive291826 - 29246124357.4
proline--trna ligaseUCH007_RS01535Q3Z9I5Negative292527 - 29423663004.9
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseUCH007_RS01540Q3ZZC9Negative294327 - 29537337325.0

Displaying genes 301 – 310 of 1560 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

78 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001603(Z)-1,2-dichloroetheneC2H2Cl2Chemical structure of (Z)-1,2-dichloroetheneNot available
Average96.943Da
Monoisotopic95.953355478Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da

Displaying 1–10 of 78 metabolites

Health Effects

No health effects information available for this bacterium.