Rhodococcus sp. Br-6

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus sp. Br-6 is a flagellated bacterium characterized by a single replicon in its genomic structure. The presence of flagella suggests that this organism possesses motility, which could facilitate its movement in various environments, possibly aiding in nutrient uptake or colonization of specific niches. The genomic data for Rhodococcus sp. Br-6 can be referenced under the accession number BDGK00000000.2. This genomic information can provide insights into the metabolic capabilities and ecological roles of this organism. Rhodococcus species are generally known for their versatility in degrading a wide range of organic pollutants, including hydrocarbons and other environmental contaminants. This metabolic adaptability is significant in bioremediation contexts, where such bacteria can be employed to clean up polluted sites. The motility conferred by flagella may enhance the efficiency of Rhodococcus sp. Br-6 in seeking out and degrading these pollutants in heterogeneous environments. In summary, the flagellated nature and single replicon of Rhodococcus sp. Br-6 highlight its potential ecological significance, particularly in bioremediation efforts where mobility and metabolic flexibility are advantageous for the degradation of environmental contaminants.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. Br-6
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus sp. Br-6 DNA, Br6_contig0023, whole genome shotgun

Gene Summary

Adenine Count

860018 bp

Thymine Count

862307 bp

Guanine Count

1892798 bp

Cytosine Count

1881353 bp

Genome Length

5496476 bp

Protein-coding Genes

5186 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonucleoside-diphosphate reductase subunit beta nrdf2Br6_00387P9WH70Positive398124 - 39913138274.7
hypothetical proteinBr6_00388Not AvailableNegative399210 - 39970417648.3
glyoxalase-like domain proteinBr6_00389Not AvailablePositive399839 - 40022513595.0
dihydroneopterin triphosphate pyrophosphataseBr6_00390P46351Negative400238 - 40071417089.0
putative siderophore-binding lipoprotein yfiy precursorBr6_00391Not AvailableNegative400724 - 40172833713.5
putative siderophore-binding lipoprotein yfiy precursorBr6_00392Not AvailableNegative401775 - 40277635444.6
cytochrome c oxidase subunit 1Br6_00393Q5YRP8Positive403142 - 40488164381.1
phosphoserine phosphataseBr6_00394A0QJI1Positive405026 - 40625242732.1
peptidyl-trna hydrolaseBr6_00395Not AvailablePositive406249 - 40699825837.8
putative abc transporter atp-binding protein ylmaBr6_00396P72477Positive407058 - 40788830144.0

Displaying genes 391 – 400 of 5246 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

481 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 481 metabolites

Health Effects

No health effects information available for this bacterium.