Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa thioester hydrolase | SAMN06297358_0993 | Not Available | Negative | 1252750 - 1253157 | 15827.1 |
| upf0755 protein | SAMN06297358_0994 | Not Available | Negative | 1253157 - 1254206 | 40038.3 |
| pasta domain, binds beta-lactams | SAMN06297358_0995 | Not Available | Negative | 1254212 - 1254979 | 28098.8 |
| d-alanine-d-alanine ligase | SAMN06297358_0996 | Not Available | Positive | 1255194 - 1256174 | 36357.7 |
| putative efflux protein, mate family | SAMN06297358_0997 | Not Available | Negative | 1256317 - 1257741 | 50678.7 |
| acyl-coa thioester hydrolase/thioesterase-3 | SAMN06297358_0998 | Not Available | Negative | 1258016 - 1258492 | 18474.3 |
| aminodeoxyfutalosine synthase | SAMN06297358_0999 | Not Available | Positive | 1258644 - 1259828 | 45875.7 |
| probable phosphoglycerate mutase | SAMN06297358_1000 | Not Available | Positive | 1259921 - 1260538 | 23406.7 |
| chorismate dehydratase | SAMN06297358_1001 | Not Available | Positive | 1260545 - 1261273 | 27006.7 |
| hypothetical protein | SAMN06297358_1002 | Not Available | Positive | 1261557 - 1262063 | 18810.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

