Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacid coa-transferase subunit a | SAMN06297358_0963 | Not Available | Positive | 1225598 - 1226305 | 25617.8 |
| 3-oxoacid coa-transferase subunit b | SAMN06297358_0964 | Not Available | Positive | 1226378 - 1227037 | 23212.5 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN06297358_0965 | Not Available | Negative | 1227127 - 1227969 | 30305.7 |
| phosphoglucomutase | SAMN06297358_0966 | Not Available | Negative | 1228149 - 1229882 | 63364.5 |
| aspartate kinase | SAMN06297358_0967 | Not Available | Positive | 1230099 - 1231421 | 48603.5 |
| diaminopimelate decarboxylase | SAMN06297358_0968 | Not Available | Positive | 1231646 - 1232803 | 42966.0 |
| hypothetical protein | SAMN06297358_0969 | Not Available | Negative | 1232873 - 1233088 | 7749.78 |
| protein of unknown function (du1801) | SAMN06297358_0970 | Not Available | Negative | 1233128 - 1233478 | 13716.8 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN06297358_0971 | Not Available | Negative | 1233478 - 1233870 | 15078.5 |
| glutaryl-coa dehydrogenase | SAMN06297358_0972 | Not Available | Negative | 1233942 - 1235132 | 43837.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

