Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaryl-coa dehydrogenase | SAMN06297358_0058 | Not Available | Positive | 59671 - 61032 | 50349.0 |
| hypothetical protein | SAMN06297358_0059 | Not Available | Negative | 61135 - 61527 | 14625.8 |
| l-lysine 6-transaminase | SAMN06297358_0060 | Not Available | Negative | 61677 - 63008 | 50196.1 |
| 1-aminocyclopropane-1-carboxylate deaminase | SAMN06297358_0061 | Not Available | Negative | 63167 - 64039 | 32613.2 |
| hypothetical protein | SAMN06297358_0062 | Not Available | Negative | 64093 - 65121 | 36628.2 |
| 23s rrna pseudouridine1911/1915/1917 synthase | SAMN06297358_0063 | Not Available | Positive | 65309 - 66331 | 38870.4 |
| branched-chain amino acid aminotransferase | SAMN06297358_0064 | Not Available | Positive | 66332 - 67171 | 31898.6 |
| methionyl-trna formyltransferase | SAMN06297358_0065 | Not Available | Negative | 67638 - 68531 | 32892.6 |
| ssra-binding protein | SAMN06297358_0066 | Not Available | Negative | 68649 - 69098 | 17500.4 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN06297358_0067 | Not Available | Positive | 69305 - 71578 | 85723.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

