Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase-3 subunit epsilon | SAMN06297358_0584 | Not Available | Positive | 715891 - 717270 | 51288.0 |
| hypothetical protein | SAMN06297358_0585 | Not Available | Positive | 717394 - 717624 | 8753.55 |
| hypothetical protein | SAMN06297358_0586 | Not Available | Negative | 717649 - 718485 | 30676.2 |
| transaldolase | SAMN06297358_0587 | Not Available | Negative | 718601 - 719260 | 23266.2 |
| glutamate synthase (nadph/nadh) large chain | SAMN06297358_0589 | Not Available | Positive | 719926 - 724434 | 166204.0 |
| glutamate synthase (nadph/nadh) small chain | SAMN06297358_0590 | Not Available | Positive | 724436 - 725905 | 53832.6 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | SAMN06297358_0591 | Not Available | Negative | 726168 - 726845 | 25180.4 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | SAMN06297358_0592 | Not Available | Negative | 726926 - 727975 | 39939.1 |
| putative abc transport system permease protein | SAMN06297358_0593 | Not Available | Positive | 728259 - 729506 | 46043.2 |
| aspartate aminotransferase | SAMN06297358_0594 | Not Available | Negative | 729585 - 730802 | 44552.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

