Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN06297358_0554 | Not Available | Positive | 683749 - 684414 | 24430.8 |
| mfs transporter, acs family, hexuronate transporter | SAMN06297358_0555 | Not Available | Positive | 684516 - 685955 | 53484.4 |
| acyl-coa reductase | SAMN06297358_0556 | Not Available | Positive | 686045 - 687664 | 59688.3 |
| Trna-lys | Not Available | Not Available | Positive | 688083 - 688155 | Not Available |
| site-specific recombinase xerd | SAMN06297358_0558 | Not Available | Positive | 688402 - 689622 | 46495.3 |
| recf/recn/smc n terminal domain-containing protein | SAMN06297358_0559 | Not Available | Negative | 689846 - 692272 | 92106.2 |
| hypothetical protein | SAMN06297358_0560 | Not Available | Negative | 692262 - 692447 | 7092.45 |
| hypothetical protein | SAMN06297358_0561 | Not Available | Negative | 692450 - 692914 | 18052.5 |
| hypothetical protein | SAMN06297358_0562 | Not Available | Negative | 692968 - 694047 | 41929.1 |
| hypothetical protein | SAMN06297358_0563 | Not Available | Negative | 694448 - 694834 | 15103.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

