Pedobacter xixiisoli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter xixiisoli is a bacterial species characterized by the presence of flagella, which suggests it has the capability for motility. This feature is significant for its ecological interactions, potentially aiding in nutrient acquisition and colonization within its environment. The genome of Pedobacter xixiisoli is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various habitats. The specific accession number for its genomic information is OCMT00000000.1, which allows for further exploration and study of its genetic characteristics and functions. Understanding the motility of Pedobacter xixiisoli through its flagella can provide insights into its ecological role, particularly in soil ecosystems where it may interact with other microorganisms and contribute to nutrient cycling. The presence of a single replicon may suggest a level of genetic efficiency that could be advantageous in fluctuating environmental conditions. Overall, the traits of Pedobacter xixiisoli indicate that it is well-suited for its ecological niche, leveraging motility and streamlined genetics to thrive in its surroundings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter xixiisoli
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter xixiisoli strain CGMCC 1.12803 genome assembly, contig:

Gene Summary

Adenine Count

1550273 bp

Thymine Count

1549681 bp

Guanine Count

942263 bp

Cytosine Count

932424 bp

Genome Length

4974702 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotide-binding universal stress protein, uspa familySAMN06297358_0544Not AvailableNegative667171 - 66762016081.2
sh3 domain-containing proteinSAMN06297358_0545Not AvailablePositive667745 - 66852429819.4
hypothetical proteinSAMN06297358_0546Not AvailableNegative668612 - 66925924101.8
tonb-dependent outer membrane receptor, susc/raga subfamily, signature regionSAMN06297358_0547Not AvailablePositive669446 - 675325224333.0
tagaturonate reductaseSAMN06297358_0548Not AvailablePositive675833 - 67734756273.2
altronate hydrolaseSAMN06297358_0549Not AvailablePositive677413 - 67905659221.7
4-deoxy-l-threo-5-hexulose uronate isomeraseSAMN06297358_0550Not AvailablePositive679230 - 68006030883.3
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN06297358_0551Not AvailablePositive680250 - 68106528818.9
glucuronate isomeraseSAMN06297358_0552Not AvailablePositive681246 - 68264653909.8
2-dehydro-3-deoxygluconokinaseSAMN06297358_0553Not AvailablePositive682743 - 68375637876.1

Displaying genes 541 – 550 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.