Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas domain s-box-containing protein | SAMN06297358_0514 | Not Available | Positive | 611223 - 614432 | 118572.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_0515 | Not Available | Positive | 614687 - 617932 | 118980.0 |
| starch-binding associating with outer membrane | SAMN06297358_0516 | Not Available | Positive | 617950 - 619791 | 68247.8 |
| protein of unknown function | SAMN06297358_0517 | Not Available | Positive | 619803 - 621443 | 59340.0 |
| glycosyl hydrolases family 43 | SAMN06297358_0518 | Not Available | Positive | 621522 - 622565 | 39338.7 |
| beta-glucosidase | SAMN06297358_0519 | Not Available | Positive | 622602 - 625226 | 96981.1 |
| two component regulator propeller | SAMN06297358_0520 | Not Available | Positive | 625422 - 629792 | 165144.0 |
| hypothetical protein | SAMN06297358_0521 | Not Available | Negative | 629773 - 629883 | 3952.96 |
| pectinesterase | SAMN06297358_0522 | Not Available | Positive | 630058 - 631032 | 36345.3 |
| polygalacturonase | SAMN06297358_0523 | Not Available | Positive | 631067 - 632716 | 60464.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

