Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase catalytic domain | SAMN06297358_0038 | Not Available | Negative | 40938 - 41465 | 19559.6 |
| hypothetical protein | SAMN06297358_0039 | Not Available | Negative | 41472 - 42425 | 36024.3 |
| atp-dependent lon protease | SAMN06297358_0040 | Not Available | Negative | 42427 - 44892 | 92078.8 |
| hypothetical protein | SAMN06297358_0041 | Not Available | Negative | 44982 - 45173 | 7277.17 |
| outer membrane protein assembly factor bamd, bamd/coml family | SAMN06297358_0042 | Not Available | Positive | 45273 - 45899 | 23396.1 |
| hypothetical protein | SAMN06297358_0043 | Not Available | Negative | 45902 - 46426 | 19828.8 |
| phosphoglycerate mutase | SAMN06297358_0044 | Not Available | Negative | 46426 - 47946 | 55376.6 |
| protein of unknown function | SAMN06297358_0045 | Not Available | Positive | 48083 - 48478 | 14962.3 |
| nicotinate-nucleotide pyrophosphorylase | SAMN06297358_0046 | Not Available | Positive | 48528 - 49370 | 30787.4 |
| glycerol-3-phosphate acyltransferase plsy | SAMN06297358_0047 | Not Available | Positive | 49430 - 50077 | 23074.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

