Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prephenate dehydratase | SAMN06297358_0442 | Not Available | Negative | 520174 - 521007 | 31445.0 |
| antitoxin pard1/3/4 | SAMN06297358_0444 | Not Available | Negative | 521573 - 521821 | 9510.33 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN06297358_0445 | Not Available | Negative | 521955 - 522884 | 36451.2 |
| 3-dehydroquinate synthase | SAMN06297358_0446 | Not Available | Negative | 522888 - 523946 | 39370.4 |
| ribosome-associated protein | SAMN06297358_0447 | Not Available | Negative | 523946 - 524152 | 7511.32 |
| l-proline dehydrogenase | SAMN06297358_0448 | Not Available | Positive | 524246 - 525430 | 44545.5 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN06297358_0449 | Not Available | Negative | 525509 - 526999 | 56146.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_0450 | Not Available | Positive | 527218 - 527775 | 22168.6 |
| fecr family protein | SAMN06297358_0451 | Not Available | Positive | 527827 - 528831 | 37479.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_0452 | Not Available | Positive | 528852 - 532124 | 121390.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

