Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cbs domain-containing protein | SAMN06297358_4243 | Not Available | Negative | 4919317 - 4919745 | 15621.2 |
| protein of unknown function | SAMN06297358_4244 | Not Available | Negative | 4919815 - 4920240 | 15813.6 |
| gh3 auxin-responsive promoter | SAMN06297358_4245 | Not Available | Negative | 4920281 - 4921789 | 58141.3 |
| lipopolysaccharide export system atp-binding protein | SAMN06297358_4246 | Not Available | Negative | 4921801 - 4922535 | 27471.5 |
| exonuclease recj | SAMN06297358_4247 | Not Available | Negative | 4922587 - 4924287 | 63639.3 |
| metallo-beta-lactamase superfamily protein | SAMN06297358_4248 | Not Available | Positive | 4924491 - 4925261 | 29345.5 |
| response regulator receiver domain-containing protein | SAMN06297358_4249 | Not Available | Negative | 4925518 - 4925925 | 15341.5 |
| polyisoprenoid-binding protein ycei | SAMN06297358_4250 | Not Available | Negative | 4926060 - 4926656 | 21543.9 |
| dna mismatch repair protein mutl | SAMN06297358_4251 | Not Available | Positive | 4926935 - 4928791 | 69504.9 |
| rhomboid-like protein | SAMN06297358_4252 | Not Available | Positive | 4928791 - 4929528 | 27602.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

