Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit 3 | SAMN06297358_4172 | Not Available | Positive | 4837722 - 4838456 | 27781.0 |
| cytochrome c oxidase subunit iv | SAMN06297358_4173 | Not Available | Positive | 4838484 - 4838864 | 14596.3 |
| protein sco1/2 | SAMN06297358_4174 | Not Available | Positive | 4838867 - 4839583 | 27011.4 |
| putative membrane protein | SAMN06297358_4175 | Not Available | Positive | 4839657 - 4840217 | 21174.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_4176 | Not Available | Positive | 4840339 - 4840935 | 23501.3 |
| fecr family protein | SAMN06297358_4177 | Not Available | Positive | 4841006 - 4842220 | 45468.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_4178 | Not Available | Positive | 4842490 - 4846191 | 137747.0 |
| susd family protein | SAMN06297358_4179 | Not Available | Positive | 4846203 - 4847681 | 55656.8 |
| substrate import-associated zinc metallohydrolase lipoprotein | SAMN06297358_4180 | Not Available | Positive | 4847690 - 4849105 | 53292.9 |
| protein of unknown function | SAMN06297358_4181 | Not Available | Positive | 4849109 - 4850458 | 48707.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

