Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclase | SAMN06297358_0402 | Not Available | Negative | 469496 - 470269 | 27926.6 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN06297358_0403 | Not Available | Negative | 470345 - 471094 | 27901.7 |
| glutamine amidotransferase | SAMN06297358_0404 | Not Available | Negative | 471175 - 471792 | 22674.3 |
| imidazoleglycerol-phosphate dehydratase | SAMN06297358_0405 | Not Available | Negative | 472025 - 473158 | 42542.7 |
| histidinol-phosphate aminotransferase | SAMN06297358_0406 | Not Available | Negative | 473158 - 474198 | 38771.2 |
| histidinol dehydrogenase | SAMN06297358_0407 | Not Available | Negative | 474246 - 475538 | 46341.2 |
| atp phosphoribosyltransferase | SAMN06297358_0408 | Not Available | Negative | 475736 - 476587 | 30663.3 |
| l,d-transpeptidase catalytic domain | SAMN06297358_0409 | Not Available | Positive | 476833 - 478434 | 62271.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_0410 | Not Available | Positive | 478875 - 482069 | 115591.0 |
| susd family protein | SAMN06297358_0411 | Not Available | Positive | 482087 - 483550 | 52787.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

