Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenol kinase/diacylglycerol kinase (atp) | SAMN06297358_4152 | Not Available | Positive | 4818284 - 4818631 | 12665.0 |
| dna replication and repair protein reco | SAMN06297358_4153 | Not Available | Positive | 4818632 - 4819357 | 28219.2 |
| Trna-val | Not Available | Not Available | Positive | 4819461 - 4819535 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 4819744 - 4819818 | Not Available |
| putative endonuclease | SAMN06297358_4156 | Not Available | Positive | 4819885 - 4820136 | 9525.35 |
| Trna-lys | Not Available | Not Available | Positive | 4820111 - 4820185 | Not Available |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN06297358_4158 | Not Available | Positive | 4820313 - 4820816 | 19140.9 |
| mfs transporter, fsr family, fosmidomycin resistance protein | SAMN06297358_4159 | Not Available | Negative | 4820882 - 4822093 | 43464.0 |
| homospermidine synthase (spermidine-specific) | SAMN06297358_4160 | Not Available | Positive | 4822344 - 4823324 | 36934.3 |
| quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit | SAMN06297358_4161 | Not Available | Positive | 4823580 - 4824872 | 47465.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

