Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| wd domain-containing protein, g-beta repeat-containing protein | SAMN06297358_0392 | Not Available | Negative | 461170 - 462069 | 33825.6 |
| b12 binding domain-containing protein | SAMN06297358_0393 | Not Available | Positive | 462397 - 463278 | 33282.7 |
| phytoene desaturase | SAMN06297358_0394 | Not Available | Positive | 463392 - 464897 | 56459.0 |
| phytoene/squalene synthetase | SAMN06297358_0395 | Not Available | Positive | 464903 - 465757 | 32865.8 |
| hypothetical protein | SAMN06297358_0396 | Not Available | Positive | 465747 - 466250 | 18843.1 |
| isopentenyl-diphosphate delta-isomerase | SAMN06297358_0397 | Not Available | Positive | 466247 - 466774 | 20245.2 |
| ligand-binding srpbcc domain-containing protein | SAMN06297358_0398 | Not Available | Positive | 466776 - 467240 | 17798.6 |
| beta-carotene 3-hydroxylase | SAMN06297358_0399 | Not Available | Positive | 467243 - 467725 | 19179.8 |
| lycopene cyclase domain-containing protein | SAMN06297358_0400 | Not Available | Positive | 467722 - 468429 | 27572.8 |
| phosphoribosyl-atp pyrophosphatase /phosphoribosyl-amp cyclohydrolase | SAMN06297358_0401 | Not Available | Negative | 468786 - 469391 | 22758.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

