Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide o-acetyltransferase | SAMN06297358_4058 | Not Available | Positive | 4704345 - 4704935 | 21630.1 |
| dtdp-l-rhamnose 4-epimerase | SAMN06297358_4059 | Not Available | Positive | 4704952 - 4706085 | 41627.4 |
| hypothetical protein | SAMN06297358_4060 | Not Available | Positive | 4706090 - 4707118 | 40967.0 |
| nucleoside-diphosphate-sugar epimerase | SAMN06297358_4061 | Not Available | Positive | 4707087 - 4708031 | 34721.9 |
| udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferase | SAMN06297358_4062 | Not Available | Positive | 4708084 - 4709079 | 38157.4 |
| ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epsc | SAMN06297358_4063 | Not Available | Positive | 4709139 - 4711079 | 73231.9 |
| hypothetical protein | SAMN06297358_4064 | Not Available | Positive | 4711086 - 4712705 | 62116.3 |
| gdp-l-fucose synthase | SAMN06297358_4065 | Not Available | Negative | 4712851 - 4713777 | 34659.6 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SAMN06297358_4066 | Not Available | Negative | 4713999 - 4715927 | 70463.9 |
| glycine hydroxymethyltransferase | SAMN06297358_4067 | Not Available | Positive | 4716112 - 4717383 | 45884.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

