Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane fusion protein, multidrug efflux system | SAMN06297358_4016 | Not Available | Negative | 4660715 - 4661899 | 42271.7 |
| transcriptional regulator, tetr family | SAMN06297358_4017 | Not Available | Negative | 4662003 - 4662575 | 22313.3 |
| predicted zn-dependent peptidase | SAMN06297358_4019 | Not Available | Positive | 4663205 - 4664434 | 46363.5 |
| peptide deformylase | SAMN06297358_4020 | Not Available | Positive | 4664552 - 4665109 | 21541.8 |
| por secretion system c-terminal sorting domain-containing protein | SAMN06297358_4021 | Not Available | Negative | 4665143 - 4667233 | 78040.7 |
| hypothetical protein | SAMN06297358_4022 | Not Available | Negative | 4667359 - 4668366 | 35479.2 |
| heat repeat-containing protein | SAMN06297358_4023 | Not Available | Negative | 4668375 - 4669145 | 28613.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_4024 | Not Available | Negative | 4669135 - 4669665 | 20141.1 |
| hypothetical protein | SAMN06297358_4025 | Not Available | Negative | 4670232 - 4670387 | 5983.46 |
| hypothetical protein | SAMN06297358_4026 | Not Available | Negative | 4670400 - 4671041 | 24101.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

