Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dctp deaminase | SAMN06297358_3915 | Not Available | Negative | 4530134 - 4530670 | 20064.2 |
| 4'-phosphopantetheinyl transferase superfamily protein | SAMN06297358_3916 | Not Available | Positive | 4530739 - 4531386 | 25338.7 |
| lipoyl(octanoyl) transferase | SAMN06297358_3917 | Not Available | Positive | 4531475 - 4532170 | 26404.5 |
| hypothetical protein | SAMN06297358_3918 | Not Available | Positive | 4532318 - 4532788 | 17198.1 |
| protein of unknown function | SAMN06297358_3919 | Not Available | Positive | 4532855 - 4533130 | 10397.0 |
| lysophospholipase l1 | SAMN06297358_3920 | Not Available | Positive | 4533141 - 4533752 | 22745.1 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN06297358_3921 | Not Available | Negative | 4533742 - 4534344 | 22985.2 |
| two-component sensor histidine kinase, contains hiska and hatpase domains | SAMN06297358_3922 | Not Available | Negative | 4534345 - 4536249 | 73544.5 |
| c1q domain-containing protein | SAMN06297358_3923 | Not Available | Positive | 4537048 - 4537773 | 25720.4 |
| hypothetical protein | SAMN06297358_3924 | Not Available | Positive | 4537808 - 4538569 | 27096.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

