Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (uracil1498-n3)-methyltransferase | SAMN06297358_3854 | Not Available | Positive | 4461670 - 4462377 | 26481.7 |
| protein of unknown function | SAMN06297358_3855 | Not Available | Positive | 4462377 - 4463099 | 27375.8 |
| biotin carboxyl carrier protein | SAMN06297358_3856 | Not Available | Positive | 4463103 - 4463603 | 18466.5 |
| branched-chain amino acid aminotransferase | SAMN06297358_3857 | Not Available | Negative | 4463729 - 4464796 | 39618.2 |
| tryptophan 2,3-dioxygenase apoenzyme | SAMN06297358_3858 | Not Available | Negative | 4464999 - 4465964 | 37804.3 |
| d-3-phosphoglycerate dehydrogenase | SAMN06297358_3859 | Not Available | Negative | 4466296 - 4467594 | 49499.6 |
| nucleoside-diphosphate-sugar epimerase | SAMN06297358_3860 | Not Available | Negative | 4467720 - 4468682 | 35195.5 |
| arginase family enzyme | SAMN06297358_3861 | Not Available | Positive | 4468776 - 4469957 | 45014.1 |
| peroxiredoxin | SAMN06297358_3862 | Not Available | Positive | 4470018 - 4471211 | 44073.1 |
| gliding motility-associated lipoprotein gldj | SAMN06297358_3863 | Not Available | Negative | 4471622 - 4473196 | 58634.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

