Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anhydro-n-acetylmuramic acid kinase | SAMN06297358_3794 | Not Available | Positive | 4392547 - 4393746 | 43461.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_3795 | Not Available | Positive | 4393876 - 4396971 | 112062.0 |
| susd family protein | SAMN06297358_3796 | Not Available | Positive | 4396992 - 4398287 | 45987.2 |
| transcriptional regulator, deor family | SAMN06297358_3797 | Not Available | Negative | 4398325 - 4399071 | 27283.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_3798 | Not Available | Positive | 4399274 - 4402417 | 114795.0 |
| starch-binding associating with outer membrane | SAMN06297358_3799 | Not Available | Positive | 4402463 - 4404010 | 58179.6 |
| protein of unknown function | SAMN06297358_3800 | Not Available | Positive | 4404024 - 4404791 | 27300.6 |
| hypothetical protein | SAMN06297358_3801 | Not Available | Positive | 4404880 - 4405095 | 8227.87 |
| carboxyl-terminal processing protease | SAMN06297358_3802 | Not Available | Positive | 4405246 - 4406940 | 62350.7 |
| ferredoxin, 2fe-2s | SAMN06297358_3803 | Not Available | Negative | 4407360 - 4407683 | 11692.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

