Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN06297358_3712 | Not Available | Positive | 4284222 - 4286624 | 90840.8 |
| protein of unknown function | SAMN06297358_3713 | Not Available | Positive | 4286676 - 4287575 | 33314.0 |
| peroxiredoxin (alkyl hydroperoxide reductase subunit c) | SAMN06297358_3714 | Not Available | Positive | 4287745 - 4288377 | 23353.3 |
| thioredoxin | SAMN06297358_3715 | Not Available | Positive | 4288572 - 4288880 | 11538.9 |
| hypothetical protein | SAMN06297358_3716 | Not Available | Positive | 4288883 - 4289146 | 9483.34 |
| pap2 superfamily protein | SAMN06297358_3717 | Not Available | Positive | 4289254 - 4290153 | 33385.6 |
| n-acetylmuramoyl-l-alanine amidase | SAMN06297358_3718 | Not Available | Negative | 4290214 - 4291041 | 31158.3 |
| peptidase family m49 | SAMN06297358_3719 | Not Available | Positive | 4291153 - 4292913 | 65600.1 |
| hypothetical protein | SAMN06297358_3720 | Not Available | Negative | 4292991 - 4293125 | 5013.08 |
| two-component system, cell cycle response regulator divk | SAMN06297358_3722 | Not Available | Negative | 4296202 - 4296564 | 13247.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

