Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formiminoglutamase | SAMN06297358_3702 | Not Available | Negative | 4274308 - 4275339 | 37881.1 |
| imidazolonepropionase | SAMN06297358_3703 | Not Available | Negative | 4275332 - 4276570 | 44684.6 |
| exodeoxyribonuclease-3 | SAMN06297358_3704 | Not Available | Negative | 4276653 - 4277420 | 29597.3 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN06297358_3705 | Not Available | Negative | 4277469 - 4278173 | 26372.8 |
| arac-type dna-binding protein | SAMN06297358_3706 | Not Available | Positive | 4278368 - 4278925 | 21018.4 |
| polyisoprenoid-binding protein ycei | SAMN06297358_3707 | Not Available | Positive | 4279133 - 4279705 | 20761.7 |
| 4,5-dopa dioxygenase extradiol | SAMN06297358_3708 | Not Available | Positive | 4279776 - 4280612 | 30741.9 |
| hypothetical protein | SAMN06297358_3709 | Not Available | Negative | 4280797 - 4281264 | 17806.4 |
| aldehyde dehydrogenase (nad+) | SAMN06297358_3710 | Not Available | Negative | 4281345 - 4282742 | 52298.5 |
| fad dependent oxidoreductase | SAMN06297358_3711 | Not Available | Positive | 4282855 - 4284054 | 44436.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

