Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06297358_3682 | Not Available | Negative | 4253561 - 4254514 | 36157.4 |
| predicted protein | SAMN06297358_3683 | Not Available | Negative | 4254542 - 4255408 | 32251.7 |
| pdz domain (also known as dhr or glgf) | SAMN06297358_3684 | Not Available | Negative | 4255416 - 4256657 | 46019.9 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN06297358_3685 | Not Available | Positive | 4256755 - 4258083 | 50105.2 |
| chitinase, gh18 family | SAMN06297358_3686 | Not Available | Positive | 4258277 - 4259308 | 37360.6 |
| 7-keto-8-aminopelargonate synthetase | SAMN06297358_3687 | Not Available | Positive | 4259308 - 4260360 | 38842.2 |
| histidine phosphatase superfamily (branch 1) | SAMN06297358_3688 | Not Available | Positive | 4260357 - 4260926 | 20873.4 |
| d-alanyl-d-alanine dipeptidase | SAMN06297358_3689 | Not Available | Negative | 4260921 - 4261607 | 25968.6 |
| alanine dehydrogenase | SAMN06297358_3690 | Not Available | Negative | 4261620 - 4262846 | 43954.6 |
| hypothetical protein | SAMN06297358_3691 | Not Available | Positive | 4262968 - 4264797 | 64947.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

