Pedobacter xixiisoli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter xixiisoli is a bacterial species characterized by the presence of flagella, which suggests it has the capability for motility. This feature is significant for its ecological interactions, potentially aiding in nutrient acquisition and colonization within its environment. The genome of Pedobacter xixiisoli is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various habitats. The specific accession number for its genomic information is OCMT00000000.1, which allows for further exploration and study of its genetic characteristics and functions. Understanding the motility of Pedobacter xixiisoli through its flagella can provide insights into its ecological role, particularly in soil ecosystems where it may interact with other microorganisms and contribute to nutrient cycling. The presence of a single replicon may suggest a level of genetic efficiency that could be advantageous in fluctuating environmental conditions. Overall, the traits of Pedobacter xixiisoli indicate that it is well-suited for its ecological niche, leveraging motility and streamlined genetics to thrive in its surroundings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter xixiisoli
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter xixiisoli strain CGMCC 1.12803 genome assembly, contig:

Gene Summary

Adenine Count

1550273 bp

Thymine Count

1549681 bp

Guanine Count

942263 bp

Cytosine Count

932424 bp

Genome Length

4974702 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine-phosphate kinaseSAMN06297358_3662Not AvailableNegative4231192 - 423223238206.6
peptidase family s41SAMN06297358_3663Not AvailableNegative4232232 - 423378559002.8
quinolinate synthetaseSAMN06297358_3664Not AvailableNegative4233787 - 423477936822.8
l-aspartate oxidaseSAMN06297358_3665Not AvailablePositive4235261 - 423684759428.1
carbonic anhydrase or acetyltransferase, isoleucine patch superfamilySAMN06297358_3666Not AvailablePositive4236898 - 423740718137.1
ig-like domain-containing proteinSAMN06297358_3667Not AvailableNegative4237408 - 423914765794.0
trna uridine 5-carboxymethylaminomethyl modification enzymeSAMN06297358_3668Not AvailableNegative4239269 - 424113169529.5
atp-binding cassette, subfamily f, uupSAMN06297358_3669Not AvailableNegative4241215 - 424307771018.5
four helix bundle sensory module for signal transductionSAMN06297358_3670Not AvailableNegative4243281 - 424396726216.2
hypothetical proteinSAMN06297358_3671Not AvailableNegative4243945 - 42440855267.63

Displaying genes 3591 – 3600 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.