Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN06297358_3540 | Not Available | Negative | 4107295 - 4108134 | 32249.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN06297358_3541 | Not Available | Negative | 4108136 - 4110406 | 85438.1 |
| s1/p1 nuclease | SAMN06297358_3542 | Not Available | Negative | 4110416 - 4111207 | 30164.3 |
| hypothetical protein | SAMN06297358_3543 | Not Available | Negative | 4111262 - 4111831 | 21987.4 |
| fumarase, class ii | SAMN06297358_3544 | Not Available | Negative | 4111959 - 4113356 | 50059.0 |
| histidine kinase | SAMN06297358_3545 | Not Available | Positive | 4113881 - 4115479 | 60501.9 |
| two component transcriptional regulator, lyttr family | SAMN06297358_3546 | Not Available | Positive | 4115484 - 4116230 | 27945.9 |
| cubico group peptidase, beta-lactamase class c family | SAMN06297358_3547 | Not Available | Positive | 4116519 - 4117754 | 47434.3 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN06297358_3548 | Not Available | Positive | 4117767 - 4118300 | 20388.3 |
| hypothetical protein | SAMN06297358_3549 | Not Available | Positive | 4118443 - 4119642 | 44077.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

