Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06297358_3510 | Not Available | Negative | 4081509 - 4082270 | 29878.4 |
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN06297358_3511 | Not Available | Negative | 4082282 - 4083469 | 43802.2 |
| hypothetical protein | SAMN06297358_3512 | Not Available | Positive | 4083558 - 4083806 | 9047.14 |
| pp_03403 | SAMN06297358_3513 | Not Available | Positive | 4083778 - 4084113 | Not Available |
| trna(adenine34) deaminase | SAMN06297358_3514 | Not Available | Positive | 4084206 - 4084685 | 17630.2 |
| superoxide dismutase, fe-mn family | SAMN06297358_3515 | Not Available | Positive | 4084766 - 4085374 | 22326.3 |
| hypothetical protein | SAMN06297358_3516 | Not Available | Positive | 4085645 - 4086091 | 16744.5 |
| protein of unknown function | SAMN06297358_3517 | Not Available | Positive | 4086088 - 4086462 | 14438.9 |
| hypothetical protein | SAMN06297358_3518 | Not Available | Positive | 4086468 - 4087361 | 33260.3 |
| lysr family transcriptional regulator, hydrogen peroxide-inducible genes activator | SAMN06297358_3519 | Not Available | Negative | 4087365 - 4088297 | 35348.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

