Pedobacter xixiisoli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter xixiisoli is a bacterial species characterized by the presence of flagella, which suggests it has the capability for motility. This feature is significant for its ecological interactions, potentially aiding in nutrient acquisition and colonization within its environment. The genome of Pedobacter xixiisoli is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various habitats. The specific accession number for its genomic information is OCMT00000000.1, which allows for further exploration and study of its genetic characteristics and functions. Understanding the motility of Pedobacter xixiisoli through its flagella can provide insights into its ecological role, particularly in soil ecosystems where it may interact with other microorganisms and contribute to nutrient cycling. The presence of a single replicon may suggest a level of genetic efficiency that could be advantageous in fluctuating environmental conditions. Overall, the traits of Pedobacter xixiisoli indicate that it is well-suited for its ecological niche, leveraging motility and streamlined genetics to thrive in its surroundings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter xixiisoli
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter xixiisoli strain CGMCC 1.12803 genome assembly, contig:

Gene Summary

Adenine Count

1550273 bp

Thymine Count

1549681 bp

Guanine Count

942263 bp

Cytosine Count

932424 bp

Genome Length

4974702 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c553SAMN06297358_3460Not AvailablePositive4030151 - 403055514581.6
hypothetical proteinSAMN06297358_3461Not AvailableNegative4031241 - 403242242776.0
duf218 domain-containing proteinSAMN06297358_3462Not AvailableNegative4032468 - 403372448124.2
starch-binding associating with outer membraneSAMN06297358_3463Not AvailableNegative4033726 - 403510851938.8
tonb-linked outer membrane protein, susc/raga familySAMN06297358_3464Not AvailableNegative4035113 - 4038331117540.0
fecr family proteinSAMN06297358_3465Not AvailableNegative4038423 - 403946039226.5
rna polymerase sigma-70 factor, ecf subfamilySAMN06297358_3466Not AvailableNegative4039715 - 404029922410.8
dipeptidyl aminopeptidase/acylaminoacyl peptidaseSAMN06297358_3467Not AvailableNegative4040623 - 404293287127.2
uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 familySAMN06297358_3468Not AvailableNegative4043036 - 404361122025.5
hypothetical proteinSAMN06297358_3469Not AvailableNegative4043770 - 404571075676.4

Displaying genes 3391 – 3400 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.