Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil phosphoribosyltransferase | SAMN06297358_3430 | Not Available | Positive | 3996831 - 3997475 | 23516.7 |
| protein-tyrosine phosphatase | SAMN06297358_3431 | Not Available | Positive | 3997485 - 3997802 | 12608.2 |
| putative hydrolase of the had superfamily | SAMN06297358_3432 | Not Available | Positive | 3997833 - 3998522 | 26405.5 |
| dinb superfamily protein | SAMN06297358_3433 | Not Available | Positive | 3998567 - 3999082 | 19696.0 |
| hypothetical protein | SAMN06297358_3434 | Not Available | Positive | 3999123 - 3999527 | 13767.2 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN06297358_3435 | Not Available | Positive | 3999554 - 4000885 | 49894.1 |
| methyltransferase domain-containing protein | SAMN06297358_3436 | Not Available | Positive | 4000882 - 4001529 | 24595.4 |
| glycosyl transferase family 2 | SAMN06297358_3437 | Not Available | Positive | 4001636 - 4002541 | 34880.5 |
| membrane associated serine protease, rhomboid family | SAMN06297358_3438 | Not Available | Negative | 4002538 - 4004085 | 58776.8 |
| n-terminal domain of tricorn protease-containing protein | SAMN06297358_3439 | Not Available | Negative | 4004158 - 4007346 | 121200.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

