Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN06297358_3420 | Not Available | Negative | 3981047 - 3981523 | 17969.2 |
| conserved hypothetical protein | SAMN06297358_3421 | Not Available | Negative | 3981575 - 3981775 | 7244.74 |
| excinuclease abc subunit b | SAMN06297358_3422 | Not Available | Negative | 3981876 - 3983915 | 77933.5 |
| glycosyl hydrolases family 16 | SAMN06297358_3423 | Not Available | Negative | 3984236 - 3985330 | 40910.0 |
| glycosyl hydrolases family 2, tim barrel domain | SAMN06297358_3424 | Not Available | Negative | 3985341 - 3986642 | 48396.4 |
| starch-binding associating with outer membrane | SAMN06297358_3425 | Not Available | Negative | 3986704 - 3988410 | 64756.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN06297358_3426 | Not Available | Negative | 3988426 - 3991473 | 111221.0 |
| lipocalin-like domain-containing protein | SAMN06297358_3427 | Not Available | Negative | 3991510 - 3992325 | 29532.7 |
| y_y_y domain-containing protein | SAMN06297358_3428 | Not Available | Positive | 3992480 - 3995377 | 109739.0 |
| hypothetical protein | SAMN06297358_3429 | Not Available | Positive | 3995452 - 3996765 | 50505.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

