Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsule synthesis protein pga_cap | SAMN06297358_3350 | Not Available | Negative | 3905813 - 3906916 | 40425.6 |
| lipoprotein spr | SAMN06297358_3351 | Not Available | Negative | 3906990 - 3907541 | 20565.6 |
| pyruvate dehydrogenase e1 component alpha subunit | SAMN06297358_3352 | Not Available | Positive | 3907999 - 3908994 | 37111.5 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | SAMN06297358_3353 | Not Available | Positive | 3909029 - 3910696 | 58029.5 |
| transporter, sss family | SAMN06297358_3354 | Not Available | Negative | 3911038 - 3912747 | 62955.7 |
| n-acetylglucosaminyl deacetylase, lmbe family | SAMN06297358_3355 | Not Available | Negative | 3912995 - 3915412 | 88746.2 |
| late embryogenesis abundant protein | SAMN06297358_3356 | Not Available | Positive | 3915574 - 3916173 | 21171.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN06297358_3357 | Not Available | Positive | 3916356 - 3919127 | 103600.0 |
| hypothetical protein | SAMN06297358_3358 | Not Available | Positive | 3919220 - 3919852 | 24070.5 |
| hypothetical protein | SAMN06297358_3359 | Not Available | Negative | 3919881 - 3920510 | 24269.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

