Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gluconate 2-dehydrogenase subunit 3 | SAMN06297358_3340 | Not Available | Negative | 3896169 - 3896828 | 24871.9 |
| choline dehydrogenase | SAMN06297358_3341 | Not Available | Negative | 3896832 - 3898565 | 64151.3 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN06297358_3342 | Not Available | Positive | 3898834 - 3900819 | 73758.1 |
| peptidase family m28 | SAMN06297358_3343 | Not Available | Positive | 3900957 - 3902267 | 48023.6 |
| ribosomal protein s18 acetylase rimi | SAMN06297358_3344 | Not Available | Negative | 3902394 - 3902888 | 18853.9 |
| thiamine pyrophosphokinase | SAMN06297358_3345 | Not Available | Negative | 3903027 - 3903593 | 21418.8 |
| protein of unknown function | SAMN06297358_3346 | Not Available | Positive | 3903747 - 3904247 | 18727.1 |
| regulator of protease activity hflc, stomatin/prohibitin superfamily | SAMN06297358_3347 | Not Available | Negative | 3904338 - 3905279 | 35004.2 |
| hypothetical protein | SAMN06297358_3348 | Not Available | Positive | 3905448 - 3905633 | 6628.46 |
| hypothetical protein | SAMN06297358_3349 | Not Available | Negative | 3905635 - 3905823 | 6993.03 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

