Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN06297358_3259 | Not Available | Negative | 3800588 - 3801340 | 25868.5 |
| gaf sensor signal transduction histidine kinase | SAMN06297358_3260 | Not Available | Negative | 3801513 - 3802712 | 44395.2 |
| sec-c motif-containing protein | SAMN06297358_3261 | Not Available | Positive | 3802836 - 3803216 | 14799.6 |
| iron complex outermembrane recepter protein | SAMN06297358_3262 | Not Available | Positive | 3803257 - 3805293 | 75183.4 |
| uncharacterized iron-regulated protein | SAMN06297358_3263 | Not Available | Negative | 3805976 - 3806848 | 32811.6 |
| predicted membrane protein | SAMN06297358_3264 | Not Available | Positive | 3807119 - 3807889 | 28642.9 |
| histidine kinase | SAMN06297358_3265 | Not Available | Positive | 3807918 - 3808964 | 38992.6 |
| two component transcriptional regulator, lyttr family | SAMN06297358_3266 | Not Available | Positive | 3808957 - 3809691 | 27424.4 |
| hypothetical protein | SAMN06297358_3267 | Not Available | Positive | 3809970 - 3810122 | 5323.02 |
| lsu ribosomal protein l34p | SAMN06297358_3268 | Not Available | Positive | 3810396 - 3810554 | 6261.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

