Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c | SAMN06297358_3219 | Not Available | Negative | 3742441 - 3742833 | 14052.6 |
| sugar phosphate isomerase/epimerase | SAMN06297358_3220 | Not Available | Negative | 3742895 - 3744016 | 42300.0 |
| predicted dehydrogenase | SAMN06297358_3221 | Not Available | Negative | 3744033 - 3745190 | 42512.2 |
| choline dehydrogenase | SAMN06297358_3222 | Not Available | Negative | 3745275 - 3746978 | 64096.9 |
| gluconate 2-dehydrogenase subunit 3 | SAMN06297358_3223 | Not Available | Negative | 3747014 - 3747598 | 21380.8 |
| sugar phosphate isomerase/epimerase | SAMN06297358_3224 | Not Available | Negative | 3748028 - 3748930 | 34151.1 |
| outer membrane receptor proteins, mostly fe transport | SAMN06297358_3225 | Not Available | Negative | 3748988 - 3751951 | 108401.0 |
| fecr family protein | SAMN06297358_3226 | Not Available | Negative | 3752173 - 3753189 | 38474.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06297358_3227 | Not Available | Negative | 3753277 - 3753840 | 22094.6 |
| nucleoside-diphosphate-sugar epimerase | SAMN06297358_3228 | Not Available | Positive | 3753998 - 3754942 | 35223.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

