Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinamide mononucleotide transporter | SAMN06297358_3158 | Not Available | Positive | 3676052 - 3676672 | 24087.9 |
| acyl-coa dehydrogenase | SAMN06297358_3159 | Not Available | Positive | 3676758 - 3677834 | 39995.1 |
| hypothetical protein | SAMN06297358_3160 | Not Available | Negative | 3678002 - 3679051 | 39367.3 |
| outer membrane receptor for ferrienterochelin and colicins | SAMN06297358_3161 | Not Available | Positive | 3679276 - 3681573 | 84560.1 |
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN06297358_3163 | Not Available | Negative | 3682845 - 3683729 | 33405.1 |
| pin domain nuclease, a component of toxin-antitoxin system (pin domain) | SAMN06297358_3164 | Not Available | Negative | 3683733 - 3684116 | 14761.3 |
| protein of unknown function | SAMN06297358_3165 | Not Available | Negative | 3684116 - 3684352 | 8950.68 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN06297358_3166 | Not Available | Negative | 3684370 - 3685122 | 28081.9 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN06297358_3167 | Not Available | Negative | 3685119 - 3685853 | 26033.6 |
| short-chain dehydrogenase | SAMN06297358_3168 | Not Available | Positive | 3685990 - 3686679 | 24726.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

