Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secy/sec61 alpha | SAMN06297358_3016 | Not Available | Positive | 3523125 - 3524465 | 48332.6 |
| methionyl aminopeptidase | SAMN06297358_3017 | Not Available | Positive | 3524465 - 3525250 | 28553.3 |
| translation initiation factor if-1 | SAMN06297358_3018 | Not Available | Positive | 3525323 - 3525541 | 8322.27 |
| lsu ribosomal protein l36p | SAMN06297358_3019 | Not Available | Positive | 3525623 - 3525739 | 4548.8 |
| ssu ribosomal protein s13p | SAMN06297358_3020 | Not Available | Positive | 3525813 - 3526190 | 14178.4 |
| small subunit ribosomal protein s11 | SAMN06297358_3021 | Not Available | Positive | 3526266 - 3526655 | 13772.9 |
| small subunit ribosomal protein s4 | SAMN06297358_3022 | Not Available | Positive | 3526723 - 3527331 | 22926.5 |
| dna-directed rna polymerase subunit alpha | SAMN06297358_3023 | Not Available | Positive | 3527410 - 3528402 | 37260.1 |
| large subunit ribosomal protein l17 | SAMN06297358_3024 | Not Available | Positive | 3528532 - 3529098 | 20658.6 |
| dipeptidase e | SAMN06297358_3026 | Not Available | Negative | 3529799 - 3530494 | 25693.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

