Pedobacter xixiisoli

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter xixiisoli is a bacterial species characterized by the presence of flagella, which suggests it has the capability for motility. This feature is significant for its ecological interactions, potentially aiding in nutrient acquisition and colonization within its environment. The genome of Pedobacter xixiisoli is comprised of a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various habitats. The specific accession number for its genomic information is OCMT00000000.1, which allows for further exploration and study of its genetic characteristics and functions. Understanding the motility of Pedobacter xixiisoli through its flagella can provide insights into its ecological role, particularly in soil ecosystems where it may interact with other microorganisms and contribute to nutrient cycling. The presence of a single replicon may suggest a level of genetic efficiency that could be advantageous in fluctuating environmental conditions. Overall, the traits of Pedobacter xixiisoli indicate that it is well-suited for its ecological niche, leveraging motility and streamlined genetics to thrive in its surroundings.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter xixiisoli
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter xixiisoli strain CGMCC 1.12803 genome assembly, contig:

Gene Summary

Adenine Count

1550273 bp

Thymine Count

1549681 bp

Guanine Count

942263 bp

Cytosine Count

932424 bp

Genome Length

4974702 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized conserved protein, duf1800 familySAMN06297358_2905Not AvailablePositive3407043 - 340903174563.7
uncharacterized conserved protein, duf1501 familySAMN06297358_2906Not AvailablePositive3409038 - 341030945788.7
hypothetical proteinSAMN06297358_2907Not AvailablePositive3410529 - 341084011414.8
iron complex outermembrane recepter proteinSAMN06297358_2908Not AvailablePositive3411138 - 341330681167.0
predicted pyrophosphatase or phosphodiesterase, alkp superfamilySAMN06297358_2909Not AvailablePositive3413438 - 341469447178.0
nicotinamide phosphoribosyltransferaseSAMN06297358_2910Not AvailableNegative3414702 - 341615354888.7
ribose-phosphate pyrophosphokinaseSAMN06297358_2911Not AvailableNegative3416166 - 341700230705.1
8-oxo-dgtp diphosphataseSAMN06297358_2912Not AvailableNegative3417075 - 341776726640.2
carboxypeptidase c (cathepsin a)SAMN06297358_2913Not AvailablePositive3417913 - 341950259273.3
acetyl-coa carboxylase carboxyl transferase subunit alphaSAMN06297358_2914Not AvailablePositive3419678 - 342064035679.0

Displaying genes 2841 – 2850 of 4214 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.