Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyoxylase, beta-lactamase superfamily ii | SAMN06297358_2854 | Not Available | Positive | 3341409 - 3342824 | 51232.4 |
| thioredoxin reductase (nadph) | SAMN06297358_2855 | Not Available | Positive | 3343092 - 3344066 | 36209.4 |
| n-carbamoylputrescine amidase | SAMN06297358_2856 | Not Available | Positive | 3344480 - 3345355 | 33178.2 |
| four helix bundle protein | SAMN06297358_2857 | Not Available | Positive | 3345446 - 3345799 | 13504.5 |
| agmatine deiminase | SAMN06297358_2858 | Not Available | Positive | 3345799 - 3346908 | 41729.1 |
| putative endonuclease | SAMN06297358_2859 | Not Available | Positive | 3347104 - 3347337 | 9440.28 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | SAMN06297358_2860 | Not Available | Positive | 3347500 - 3348243 | 26279.7 |
| l,d-transpeptidase catalytic domain | SAMN06297358_2861 | Not Available | Negative | 3348820 - 3349611 | 30155.7 |
| hypothetical protein | SAMN06297358_2862 | Not Available | Positive | 3349739 - 3351823 | 77814.1 |
| uncharacterized membrane protein yeih | SAMN06297358_2863 | Not Available | Positive | 3351823 - 3352434 | 22078.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

