Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted o-methyltransferase yrrm | SAMN06297358_2733 | Not Available | Positive | 3180127 - 3180909 | 30013.9 |
| acyl-homoserine lactone (ahl) acylase pvdq | SAMN06297358_2734 | Not Available | Negative | 3180911 - 3183094 | 82701.1 |
| surface antigen | SAMN06297358_2735 | Not Available | Negative | 3183183 - 3184310 | 42599.4 |
| dna-binding transcriptional regulator, marr family | SAMN06297358_2736 | Not Available | Positive | 3184746 - 3185183 | 16241.7 |
| 3-hydroxyacyl-coa dehydrogenase | SAMN06297358_2737 | Not Available | Positive | 3185186 - 3187573 | 87812.7 |
| four helix bundle protein | SAMN06297358_2738 | Not Available | Positive | 3187610 - 3187960 | 13006.9 |
| acetyl-coa acyltransferase | SAMN06297358_2739 | Not Available | Positive | 3188021 - 3189196 | 41426.1 |
| four helix bundle protein | SAMN06297358_2740 | Not Available | Positive | 3189336 - 3189686 | 12973.7 |
| acyl-coa dehydrogenase | SAMN06297358_2741 | Not Available | Positive | 3189760 - 3191541 | 65122.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase fkpa | SAMN06297358_2742 | Not Available | Positive | 3191787 - 3192257 | 16559.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

