Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine triad (hit) family protein | SAMN06297358_2723 | Not Available | Positive | 3168039 - 3168431 | 14339.6 |
| ntp pyrophosphatase, house-cleaning of non-canonical ntps | SAMN06297358_2724 | Not Available | Negative | 3168505 - 3168831 | 12438.8 |
| arac-type dna-binding protein | SAMN06297358_2725 | Not Available | Negative | 3168918 - 3169919 | 37958.4 |
| outer membrane receptor proteins, mostly fe transport | SAMN06297358_2726 | Not Available | Positive | 3170008 - 3172455 | 91628.0 |
| hypothetical protein | SAMN06297358_2727 | Not Available | Positive | 3172464 - 3173888 | 50674.7 |
| d-tyrosyl-trna(tyr) deacylase | SAMN06297358_2728 | Not Available | Negative | 3173980 - 3174432 | 16426.9 |
| hypothetical protein | SAMN06297358_2729 | Not Available | Positive | 3174464 - 3175477 | 39063.4 |
| hypothetical protein | SAMN06297358_2730 | Not Available | Positive | 3175443 - 3177851 | 92723.3 |
| fructokinase | SAMN06297358_2731 | Not Available | Negative | 3177990 - 3178874 | 32128.1 |
| transglutaminase-like superfamily protein | SAMN06297358_2732 | Not Available | Negative | 3178874 - 3179749 | 33682.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

