Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prtrc system protein b | SAMN06297358_2682 | Not Available | Positive | 3121037 - 3121747 | 26851.2 |
| prtrc system thif family protein | SAMN06297358_2683 | Not Available | Positive | 3121774 - 3122532 | 28045.5 |
| outer membrane protein beta-barrel domain-containing protein | SAMN06297358_2684 | Not Available | Positive | 3122798 - 3123577 | 28251.5 |
| putative sos response-associated peptidase yedk | SAMN06297358_2685 | Not Available | Negative | 3123614 - 3124300 | 25844.2 |
| helix-turn-helix | SAMN06297358_2686 | Not Available | Negative | 3124349 - 3124609 | 10128.3 |
| dna polymerase-4 | SAMN06297358_2687 | Not Available | Positive | 3124702 - 3125859 | 43386.9 |
| dna polymerase-3 subunit alpha/error-prone dna polymerase | SAMN06297358_2688 | Not Available | Positive | 3125861 - 3128914 | 116587.0 |
| site-specific dna recombinase | SAMN06297358_2689 | Not Available | Positive | 3129185 - 3130819 | 62425.7 |
| hypothetical protein | SAMN06297358_2690 | Not Available | Negative | 3130934 - 3131146 | 8139.9 |
| hypothetical protein | SAMN06297358_2691 | Not Available | Negative | 3131248 - 3132885 | 62920.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

